Joint Binding Deconvolution

Downloading and Compiling JBD

You will need a recent version of Matlab to compile JBD. While you can run JBD directly in Matlab, you'll want a compiled version for most purposes. If you're having trouble with the compiler, make sure you have a recent version. We've used version 2006a with good results, but various 6.x versions don't work.

Running JBD

Running TAMO

The TAMO package takes the positional priors and input sequences from JBD to run motif discovery. See the Fraenkel Lab pages for instructions on setting it up.
JBD uses the Lightspeed MATLAB library.
Computational Genomics Research Group, the Fraenkel Lab, and the Young Lab.